![]() ![]() Only found in less than 2% of control samples bionano SV calls with all segments > 10kb, recommended filter and.bionano SV calls with all segments > 10kb.Sheet with all array calls by ChAS, 1 sheet with all SV pipeline callsĪnd 1 sheet with all CNV pipeline calls from Bionano Access.įor following examples of this document, we used : The output file will be a unique Excel file containing multiple sheets :ġ sheet with counts of shared and unique calls between technologies, 1 Pre-filtered SV calls as csv format from Bionano Access.Pre-filtered CNV calls as csv format from Bionano Access.ChAS SNP array output (as exported by Ronald van Beek).This R script is made to create plot, summary statistics and tables ofĬNV calls from bionano (SV and CNV pipeline) compared to CNV calls from Kevin Yauy, MD (Radboudumc, CHU de Montpellier) ![]()
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